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LOC109866568 alpha-(1,3)-fucosyltransferase 9 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109866568, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109866568
Gene description
alpha-(1,3)-fucosyltransferase 9
See related
Ensembl:ENSOKIG00005032936
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109866568 in Genome Data Viewer
Location:
chromosome: LG21
Exon count:
2
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG21 NC_034194.2 (34048585..34053749)
100 previous assembly Okis_V1 (GCF_002021735.1) LG21 NC_034194.1 (30984577..30986575)

Linkage Group LG21 - NC_034194.2Genomic Context describing neighboring genes Neighboring gene lactoylglutathione lyase-like Neighboring gene uncharacterized LOC109866350 Neighboring gene photoreceptor cilium actin regulator-like Neighboring gene alpha-(1,3)-fucosyltransferase 9-like Neighboring gene alpha-(1,3)-fucosyltransferase 9-like Neighboring gene uncharacterized LOC109866589

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-(1->3)-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-(1,3)-fucosyltransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034194.2 Reference Okis_V2 Primary Assembly

    Range
    34048585..34053749
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020455297.2 → XP_020310886.1  alpha-(1,3)-fucosyltransferase 9

    UniProtKB/TrEMBL
    A0A8C7IS18, A0A8C7IZQ9
    Related
    ENSOKIP00005076172.1, ENSOKIT00005081179.1
    Conserved Domains (2) summary
    pfam00852
    Location:186 → 365
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:62 → 167
    Glyco_tran_10_N; Fucosyltransferase, N-terminal
Nucleotide Protein
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Gene LinkOut

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