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LOC109864875 C1GALT1-specific chaperone 1 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109864875, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109864875
Gene description
C1GALT1-specific chaperone 1
See related
Ensembl:ENSOKIG00005026383
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109864875 in Genome Data Viewer
Location:
chromosome: LG19
Exon count:
2
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG19 NC_034192.2 (44792423..44794406)
100 previous assembly Okis_V1 (GCF_002021735.1) LG19 NC_034192.1 (41324305..41326289)

Linkage Group LG19 - NC_034192.2Genomic Context describing neighboring genes Neighboring gene inositol polyphosphate 5-phosphatase OCRL-like Neighboring gene chloride intracellular channel protein 2-like Neighboring gene MCTS1 re-initiation and release factor Neighboring gene cullin 4B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C1GALT1-specific chaperone 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034192.2 Reference Okis_V2 Primary Assembly

    Range
    44792423..44794406
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020452898.2 → XP_020308487.1  C1GALT1-specific chaperone 1

    UniProtKB/TrEMBL
    A0A8C7ML00
    Related
    ENSOKIP00005061469.1, ENSOKIT00005065328.1

  2. XM_020452897.2 → XP_020308486.1  C1GALT1-specific chaperone 1

    UniProtKB/TrEMBL
    A0A8C7ML00
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases