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LOC109864527 stress-70 protein, mitochondrial [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109864527, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109864527
Gene description
stress-70 protein, mitochondrial
See related
Ensembl:ENSOKIG00005010369
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109864527 in Genome Data Viewer
Location:
chromosome: LG19
Exon count:
17
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG19 NC_034192.2 (27882857..27896821)
100 previous assembly Okis_V1 (GCF_002021735.1) LG19 NC_034192.1 (24218402..24232407)

Linkage Group LG19 - NC_034192.2Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase 2D-like Neighboring gene uncharacterized LOC109864528 Neighboring gene uncharacterized LOC116355084 Neighboring gene uncharacterized LOC109910041 Neighboring gene small nucleolar RNA SNORA74

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent protein folding chaperone IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heat shock protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables misfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to unfolded protein IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chaperone cofactor-dependent protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
stress-70 protein, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034192.2 Reference Okis_V2 Primary Assembly

    Range
    27882857..27896821
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020452369.2 → XP_020307958.1  stress-70 protein, mitochondrial

    UniProtKB/TrEMBL
    A0A8C7FCN0, A0A8C7FDE5
    Related
    ENSOKIP00005026121.1, ENSOKIT00005027630.1
    Conserved Domains (1) summary
    PRK00290
    Location:52 → 658
    dnaK; molecular chaperone DnaK; Provisional
Nucleotide Protein
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