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LOC109864489 plectin [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109864489, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109864489
Gene description
plectin
See related
Ensembl:ENSOKIG00005000274
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109864489 in Genome Data Viewer
Location:
chromosome: LG2
Exon count:
40
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG2 NC_034175.2 (26801574..26978552, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG2 NC_034175.1 (24877219..24961430, complement)

Linkage Group LG2 - NC_034175.2Genomic Context describing neighboring genes Neighboring gene riboflavin transporter 2 Neighboring gene microtubule-actin cross-linking factor 1 Neighboring gene nuclear factor 7, brain Neighboring gene R-spondin-2 Neighboring gene eukaryotic translation initiation factor 3 subunit E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034175.2 Reference Okis_V2 Primary Assembly

    Range
    26801574..26978552 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031792134.1 → XP_031647994.1  plectin isoform X1

    UniProtKB/TrEMBL
    A0A8C7C862
    Conserved Domains (9) summary
    PTZ00121
    Location:2291 → 2983
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3674 → 3708
    PLEC; Plectin repeat
    PHA03247
    Location:112 → 456
    PHA03247; large tegument protein UL36; Provisional
    COG5069
    Location:910 → 1257
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1514 → 1703
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4943 → 4982
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam17902
    Location:1689 → 1756
    SH3_10; SH3 domain
    pfam18373
    Location:1791 → 1868
    Spectrin_like; Spectrin like domain

  2. XM_031792175.1 → XP_031648035.1  plectin isoform X10

    UniProtKB/TrEMBL
    A0A8C7CHL8
    Related
    ENSOKIP00005000555.1, ENSOKIT00005000583.1
    Conserved Domains (7) summary
    PTZ00121
    Location:1422 → 2114
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:2805 → 2839
    PLEC; Plectin repeat
    COG5069
    Location:72 → 403
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:652 → 841
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4074 → 4113
    Plectin; Plectin repeat
    pfam17902
    Location:827 → 894
    SH3_10; SH3 domain
    pfam18373
    Location:929 → 1006
    Spectrin_like; Spectrin like domain

  3. XM_031792137.1 → XP_031647997.1  plectin isoform X2

    UniProtKB/TrEMBL
    A0A8C7C862
    Conserved Domains (9) summary
    PTZ00121
    Location:2287 → 2979
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3670 → 3704
    PLEC; Plectin repeat
    PHA03247
    Location:112 → 456
    PHA03247; large tegument protein UL36; Provisional
    COG5069
    Location:910 → 1253
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1510 → 1699
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4939 → 4978
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam17902
    Location:1685 → 1752
    SH3_10; SH3 domain
    pfam18373
    Location:1787 → 1864
    Spectrin_like; Spectrin like domain

  4. XM_031792144.1 → XP_031648004.1  plectin isoform X4

    UniProtKB/TrEMBL
    A0A8C7C862
    Conserved Domains (9) summary
    PTZ00121
    Location:2283 → 2975
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3666 → 3700
    PLEC; Plectin repeat
    PHA03247
    Location:112 → 456
    PHA03247; large tegument protein UL36; Provisional
    COG5069
    Location:910 → 1257
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1506 → 1695
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4935 → 4974
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam17902
    Location:1681 → 1748
    SH3_10; SH3 domain
    pfam18373
    Location:1783 → 1860
    Spectrin_like; Spectrin like domain

  5. XM_031792139.1 → XP_031647999.1  plectin isoform X3

    UniProtKB/TrEMBL
    A0A8C7C862
    Related
    ENSOKIP00005000673.1, ENSOKIT00005000704.1
    Conserved Domains (9) summary
    PTZ00121
    Location:2284 → 2976
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3667 → 3701
    PLEC; Plectin repeat
    PHA03247
    Location:112 → 456
    PHA03247; large tegument protein UL36; Provisional
    COG5069
    Location:910 → 1257
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1514 → 1703
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4936 → 4975
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam17902
    Location:1689 → 1756
    SH3_10; SH3 domain
    pfam18373
    Location:1791 → 1868
    Spectrin_like; Spectrin like domain

  6. XM_031792148.1 → XP_031648008.1  plectin isoform X5

    UniProtKB/TrEMBL
    A0A8C7C862
    Conserved Domains (9) summary
    PTZ00121
    Location:2279 → 2971
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3662 → 3696
    PLEC; Plectin repeat
    PHA03247
    Location:112 → 456
    PHA03247; large tegument protein UL36; Provisional
    COG5069
    Location:910 → 1245
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1502 → 1691
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4931 → 4970
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam17902
    Location:1677 → 1744
    SH3_10; SH3 domain
    pfam18373
    Location:1779 → 1856
    Spectrin_like; Spectrin like domain

  7. XM_031792159.1 → XP_031648019.1  plectin isoform X7

    UniProtKB/TrEMBL
    A0A8C7C862, A0A8C7CJX6
    Related
    ENSOKIP00005000590.1, ENSOKIT00005000618.1
    Conserved Domains (9) summary
    PTZ00121
    Location:2267 → 2959
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3650 → 3684
    PLEC; Plectin repeat
    PHA03247
    Location:112 → 456
    PHA03247; large tegument protein UL36; Provisional
    COG5069
    Location:910 → 1241
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1490 → 1679
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4919 → 4958
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam17902
    Location:1665 → 1732
    SH3_10; SH3 domain
    pfam18373
    Location:1767 → 1844
    Spectrin_like; Spectrin like domain

  8. XM_031792153.1 → XP_031648013.1  plectin isoform X6

    UniProtKB/TrEMBL
    A0A8C7C862
    Conserved Domains (9) summary
    PTZ00121
    Location:2275 → 2967
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3658 → 3692
    PLEC; Plectin repeat
    PHA03247
    Location:112 → 456
    PHA03247; large tegument protein UL36; Provisional
    COG5069
    Location:910 → 1241
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1498 → 1687
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4927 → 4966
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam17902
    Location:1673 → 1740
    SH3_10; SH3 domain
    pfam18373
    Location:1775 → 1852
    Spectrin_like; Spectrin like domain

  9. XM_031792161.1 → XP_031648021.1  plectin isoform X8

    UniProtKB/TrEMBL
    A0A8C7C862, A0A8C7CHS6
    Related
    ENSOKIP00005000615.1, ENSOKIT00005000644.1
    Conserved Domains (9) summary
    PTZ00121
    Location:2260 → 2952
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:3643 → 3677
    PLEC; Plectin repeat
    PHA03247
    Location:112 → 456
    PHA03247; large tegument protein UL36; Provisional
    COG5069
    Location:910 → 1241
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1490 → 1679
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4912 → 4951
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam17902
    Location:1665 → 1732
    SH3_10; SH3 domain
    pfam18373
    Location:1767 → 1844
    Spectrin_like; Spectrin like domain

  10. XM_031792186.1 → XP_031648046.1  plectin isoform X14

    Conserved Domains (10) summary
    smart00250
    Location:2556 → 2590
    PLEC; Plectin repeat
    COG1196
    Location:2006 → 2357
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5069
    Location:910 → 1257
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2298 → 2478
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:1514 → 1703
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3825 → 3864
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam15661
    Location:110 → 338
    CF222; C6orf222, uncharacterized family
    pfam17902
    Location:1689 → 1756
    SH3_10; SH3 domain
    pfam18373
    Location:1791 → 1868
    Spectrin_like; Spectrin like domain

  11. XM_031792194.1 → XP_031648054.1  plectin isoform X15

    Conserved Domains (10) summary
    smart00250
    Location:2549 → 2583
    PLEC; Plectin repeat
    COG1196
    Location:1999 → 2350
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5069
    Location:910 → 1257
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2291 → 2471
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:1514 → 1703
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3818 → 3857
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam15661
    Location:110 → 338
    CF222; C6orf222, uncharacterized family
    pfam17902
    Location:1689 → 1756
    SH3_10; SH3 domain
    pfam18373
    Location:1791 → 1868
    Spectrin_like; Spectrin like domain

  12. XM_031792196.1 → XP_031648056.1  plectin isoform X16

    Conserved Domains (10) summary
    smart00250
    Location:2525 → 2559
    PLEC; Plectin repeat
    COG1196
    Location:1975 → 2326
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5069
    Location:910 → 1241
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK00409
    Location:2267 → 2447
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
    cd00176
    Location:1490 → 1679
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:3794 → 3833
    Plectin; Plectin repeat
    pfam03501
    Location:7 → 99
    S10_plectin; Plectin/S10 domain
    pfam15661
    Location:110 → 338
    CF222; C6orf222, uncharacterized family
    pfam17902
    Location:1665 → 1732
    SH3_10; SH3 domain
    pfam18373
    Location:1767 → 1844
    Spectrin_like; Spectrin like domain

  13. XM_031792176.1 → XP_031648036.1  plectin isoform X11

    UniProtKB/TrEMBL
    A0A8C7C5B6
    Conserved Domains (7) summary
    PTZ00121
    Location:1385 → 2077
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:2768 → 2802
    PLEC; Plectin repeat
    COG5069
    Location:9 → 351
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:608 → 797
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4037 → 4076
    Plectin; Plectin repeat
    pfam17902
    Location:783 → 850
    SH3_10; SH3 domain
    pfam18373
    Location:885 → 962
    Spectrin_like; Spectrin like domain

  14. XM_031792169.1 → XP_031648029.1  plectin isoform X9

    UniProtKB/TrEMBL
    A0A8C7C5B6
    Conserved Domains (7) summary
    PTZ00121
    Location:1424 → 2116
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:2807 → 2841
    PLEC; Plectin repeat
    COG5069
    Location:48 → 390
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:647 → 836
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4076 → 4115
    Plectin; Plectin repeat
    pfam17902
    Location:822 → 889
    SH3_10; SH3 domain
    pfam18373
    Location:924 → 1001
    Spectrin_like; Spectrin like domain

  15. XM_031792180.1 → XP_031648040.1  plectin isoform X12

    UniProtKB/TrEMBL
    A0A8C7C5B6
    Conserved Domains (7) summary
    PTZ00121
    Location:1400 → 2092
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:2783 → 2817
    PLEC; Plectin repeat
    COG5069
    Location:48 → 374
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:623 → 812
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4052 → 4091
    Plectin; Plectin repeat
    pfam17902
    Location:798 → 865
    SH3_10; SH3 domain
    pfam18373
    Location:900 → 977
    Spectrin_like; Spectrin like domain

  16. XM_031792182.1 → XP_031648042.1  plectin isoform X13

    UniProtKB/TrEMBL
    A0A8C7C5B6
    Related
    ENSOKIP00005000687.1, ENSOKIT00005000718.1
    Conserved Domains (7) summary
    PTZ00121
    Location:1393 → 2085
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:2776 → 2810
    PLEC; Plectin repeat
    COG5069
    Location:48 → 374
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:623 → 812
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:4045 → 4084
    Plectin; Plectin repeat
    pfam17902
    Location:798 → 865
    SH3_10; SH3 domain
    pfam18373
    Location:900 → 977
    Spectrin_like; Spectrin like domain
Nucleotide Protein
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