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sxc O-linked N-acetylglucosamine (GlcNAc) transferase sxc [ Pseudomyrmex gracilis ]

Gene ID: 109858518, updated on 1-Oct-2024

Summary

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Gene symbol
sxc
Gene description
O-linked N-acetylglucosamine (GlcNAc) transferase sxc
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudomyrmex gracilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Pseudomyrmecinae; Pseudomyrmex
Orthologs
honey bee all
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Genomic context

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See sxc in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current ASM200609v1 (GCF_002006095.1) Unplaced Scaffold NW_018020793.1 (11973..29629)

NW_018020793.1Genomic Context describing neighboring genes Neighboring gene ankyrin-1-like Neighboring gene ankyrin-1-like Neighboring gene small ribonucleoprotein particle U1 subunit 70K Neighboring gene potassium voltage-gated channel protein Shaker Neighboring gene uncharacterized LOC109858517

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018020793.1 Unplaced Scaffold Reference ASM200609v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudomyrmex gracilis Annotation Release 100

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200609v1

Genomic

  1. NW_018020793.1 Reference ASM200609v1

    Range
    11973..29629
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020435859.1 → XP_020291448.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X2

    Conserved Domains (3) summary
    sd00006
    Location:249 → 276
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:576 → 1040
    Glyco_transf_41; Glycosyl transferase family 41
    cl26002
    Location:46 → 488
    TPR_11; TPR repeat

  2. XM_020435858.1 → XP_020291447.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X1

    Conserved Domains (3) summary
    sd00006
    Location:268 → 295
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:595 → 1059
    Glyco_transf_41; Glycosyl transferase family 41
    cl26002
    Location:75 → 507
    TPR_11; TPR repeat

  3. XM_020435860.1 → XP_020291449.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X3

    Conserved Domains (3) summary
    sd00006
    Location:248 → 275
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:575 → 1039
    Glyco_transf_41; Glycosyl transferase family 41
    cl26002
    Location:42 → 487
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases