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LOC109855405 chymotrypsin-1-like [ Pseudomyrmex gracilis ]

Gene ID: 109855405, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109855405
Gene description
chymotrypsin-1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudomyrmex gracilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Pseudomyrmecinae; Pseudomyrmex
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Genomic context

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See LOC109855405 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current ASM200609v1 (GCF_002006095.1) Unplaced Scaffold NW_018020672.1 (12522..13946)

NW_018020672.1Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase Fkbp12 Neighboring gene Protein EFR3 homolog stmA Neighboring gene WD repeat-containing protein on Y chromosome Neighboring gene out at first

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018020672.1 Unplaced Scaffold Reference ASM200609v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chymotrypsin-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudomyrmex gracilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200609v1

Genomic

  1. NW_018020672.1 Reference ASM200609v1

    Range
    12522..13946
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020429632.1 → XP_020285221.1  chymotrypsin-1-like

    Conserved Domains (1) summary
    cd00190
    Location:25 → 245
    Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases