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Chsy Chondroitin sulfate synthase [ Pseudomyrmex gracilis ]

Gene ID: 109855063, updated on 10-Oct-2024

Summary

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Gene symbol
Chsy
Gene description
Chondroitin sulfate synthase
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudomyrmex gracilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Pseudomyrmecinae; Pseudomyrmex
Orthologs
fruit fly honey bee all
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Genomic context

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See Chsy in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM200609v1 (GCF_002006095.1) Unplaced Scaffold NW_018020587.1 (145534..160976, complement)

NW_018020587.1Genomic Context describing neighboring genes Neighboring gene putative glycine-rich cell wall structural protein 1 Neighboring gene lysozyme-like Neighboring gene A-kinase anchor protein 9-like Neighboring gene 2-phosphoxylose phosphatase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018020587.1 Unplaced Scaffold Reference ASM200609v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudomyrmex gracilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200609v1

Genomic

  1. NW_018020587.1 Reference ASM200609v1

    Range
    145534..160976 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020428908.1 → XP_020284497.1  chondroitin sulfate synthase 1

    Conserved Domains (2) summary
    pfam05679
    Location:237 → 787
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:83 → 269
    Galactosyl_T; Galactosyltransferase

  2. XM_020428881.1 → XP_020284470.1  chondroitin sulfate synthase 1

    Conserved Domains (2) summary
    pfam05679
    Location:237 → 787
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:83 → 269
    Galactosyl_T; Galactosyltransferase

  3. XM_020428889.1 → XP_020284478.1  chondroitin sulfate synthase 1

    Conserved Domains (2) summary
    pfam05679
    Location:237 → 787
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:83 → 269
    Galactosyl_T; Galactosyltransferase

  4. XM_020428900.1 → XP_020284489.1  chondroitin sulfate synthase 1

    Conserved Domains (2) summary
    pfam05679
    Location:237 → 787
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:83 → 269
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases