U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

sotv exostosin glycosyltransferase sotv [ Pseudomyrmex gracilis ]

Gene ID: 109854839, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
sotv
Gene description
exostosin glycosyltransferase sotv
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudomyrmex gracilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Pseudomyrmecinae; Pseudomyrmex
Orthologs
fruit fly honey bee all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See sotv in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ASM200609v1 (GCF_002006095.1) Unplaced Scaffold NW_018020658.1 (263348..267221)

NW_018020658.1Genomic Context describing neighboring genes Neighboring gene RAS oncogene family member Rab35 Neighboring gene ribosomal protein L5 Neighboring gene Taspase 1 Neighboring gene sentrin-specific protease 1-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_018020658.1 Unplaced Scaffold Reference ASM200609v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
exostosin-2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Pseudomyrmex gracilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200609v1

Genomic

  1. NW_018020658.1 Reference ASM200609v1

    Range
    263348..267221
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020428355.1 → XP_020283944.1  exostosin-2 isoform X5

    Conserved Domains (2) summary
    pfam03016
    Location:97 → 379
    Exostosin; Exostosin family
    pfam09258
    Location:457 → 603
    Glyco_transf_64; Glycosyl transferase family 64 domain

  2. XM_020428351.1 → XP_020283940.1  exostosin-2 isoform X1

    Conserved Domains (2) summary
    pfam03016
    Location:97 → 379
    Exostosin; Exostosin family
    pfam09258
    Location:457 → 698
    Glyco_transf_64; Glycosyl transferase family 64 domain

  3. XM_020428352.1 → XP_020283941.1  exostosin-2 isoform X2

    Conserved Domains (2) summary
    pfam03016
    Location:97 → 379
    Exostosin; Exostosin family
    pfam09258
    Location:452 → 693
    Glyco_transf_64; Glycosyl transferase family 64 domain

  4. XM_020428353.1 → XP_020283942.1  exostosin-2 isoform X3

    Conserved Domains (2) summary
    pfam03016
    Location:97 → 373
    Exostosin; Exostosin family
    pfam09258
    Location:451 → 692
    Glyco_transf_64; Glycosyl transferase family 64 domain

  5. XM_020428354.1 → XP_020283943.1  exostosin-2 isoform X4

    Conserved Domains (2) summary
    pfam03016
    Location:97 → 373
    Exostosin; Exostosin family
    pfam09258
    Location:446 → 687
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases