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Chpf Chondroitin polymerizing factor [ Pseudomyrmex gracilis ]

Gene ID: 109854571, updated on 1-Oct-2024

Summary

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Gene symbol
Chpf
Gene description
Chondroitin polymerizing factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudomyrmex gracilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Pseudomyrmecinae; Pseudomyrmex
Orthologs
honey bee all
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Genomic context

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See Chpf in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM200609v1 (GCF_002006095.1) Unplaced Scaffold NW_018020653.1 (424330..438732)

NW_018020653.1Genomic Context describing neighboring genes Neighboring gene Glycerol-3-phosphate acyltransferase 4 Neighboring gene myoblast city Neighboring gene uncharacterized LOC109854524 Neighboring gene Cytochrome c oxidase subunit 7C Neighboring gene lipase maturation factor 2-like Neighboring gene ELL-associated factor Neighboring gene proximal sequence element A Pbp95

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018020653.1 Unplaced Scaffold Reference ASM200609v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pseudomyrmex gracilis Annotation Release 100

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200609v1

Genomic

  1. NW_018020653.1 Reference ASM200609v1

    Range
    424330..438732
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020427790.1 → XP_020283379.1  chondroitin sulfate synthase 2

    Conserved Domains (1) summary
    pfam05679
    Location:233 → 756
    CHGN; Chondroitin N-acetylgalactosaminyltransferase

  2. XM_020427791.1 → XP_020283380.1  chondroitin sulfate synthase 2

    Conserved Domains (1) summary
    pfam05679
    Location:233 → 756
    CHGN; Chondroitin N-acetylgalactosaminyltransferase

  3. XM_020427789.1 → XP_020283378.1  chondroitin sulfate synthase 2

    Conserved Domains (1) summary
    pfam05679
    Location:233 → 756
    CHGN; Chondroitin N-acetylgalactosaminyltransferase

  4. XM_020427788.1 → XP_020283377.1  chondroitin sulfate synthase 2

    Conserved Domains (1) summary
    pfam05679
    Location:233 → 756
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
Nucleotide Protein
Heading Accession and Version

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