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LOC109850844 DNA-directed RNA polymerases II, IV and V subunit 9A [ Asparagus officinalis (garden asparagus) ]

Gene ID: 109850844, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109850844
Gene description
DNA-directed RNA polymerases II, IV and V subunit 9A
Locus tag
A4U43_C07F12360
Gene type
protein coding
RefSeq status
MODEL
Organism
Asparagus officinalis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Genomic context

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See LOC109850844 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Aspof.V1 (GCF_001876935.1) 7 NC_033800.1 (38517720..38527981)

Chromosome 7 - NC_033800.1Genomic Context describing neighboring genes Neighboring gene outer envelope pore protein 16-2, chloroplastic Neighboring gene pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like Neighboring gene monocopper oxidase-like protein SKU5 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 Neighboring gene monocopper oxidase-like protein SKU5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_033800.1 Chromosome 7 Reference Aspof.V1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription-coupled nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerases II, IV and V subunit 9A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Asparagus officinalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aspof.V1

Genomic

  1. NC_033800.1 Reference Aspof.V1

    Range
    38517720..38527981
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020420912.1 → XP_020276501.1  DNA-directed RNA polymerases II, IV and V subunit 9A

    UniProtKB/TrEMBL
    A0A5P1EBP4
    Conserved Domains (2) summary
    smart00661
    Location:5 → 58
    RPOL9; RNA polymerase subunit 9
    cd10508
    Location:64 → 113
    Zn-ribbon_RPB9; C-terminal zinc ribbon domain of RPB9 subunit of RNA polymerase II
Nucleotide Protein
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