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LOC109850039 hydroxyproline O-arabinosyltransferase 3-like [ Asparagus officinalis (garden asparagus) ]

Gene ID: 109850039, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109850039
Gene description
hydroxyproline O-arabinosyltransferase 3-like
Locus tag
A4U43_C07F16880
Gene type
protein coding
RefSeq status
MODEL
Organism
Asparagus officinalis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Genomic context

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See LOC109850039 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Aspof.V1 (GCF_001876935.1) 7 NC_033800.1 (57197477..57211240, complement)

Chromosome 7 - NC_033800.1Genomic Context describing neighboring genes Neighboring gene NADPH:quinone oxidoreductase-like Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene mRNA-capping enzyme-like Neighboring gene aspartyl protease AED3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_033800.1 Chromosome 7 Reference Aspof.V1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-arabinosyltransferase 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Asparagus officinalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aspof.V1

Genomic

  1. NC_033800.1 Reference Aspof.V1

    Range
    57197477..57211240 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020419938.1 → XP_020275527.1  hydroxyproline O-arabinosyltransferase 3-like isoform X2

    UniProtKB/TrEMBL
    A0A5P1ECI7

  2. XM_020419933.1 → XP_020275522.1  hydroxyproline O-arabinosyltransferase 3-like isoform X1

  3. XM_020419937.1 → XP_020275526.1  hydroxyproline O-arabinosyltransferase 3-like isoform X1

  4. XM_020419934.1 → XP_020275523.1  hydroxyproline O-arabinosyltransferase 3-like isoform X1

  5. XM_020419939.1 → XP_020275528.1  hydroxyproline O-arabinosyltransferase 3-like isoform X3

Nucleotide Protein
Heading Accession and Version

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