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LOC109841011 probable cellulose synthase A catalytic subunit 6 [UDP-forming] [ Asparagus officinalis (garden asparagus) ]

Gene ID: 109841011, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109841011
Gene description
probable cellulose synthase A catalytic subunit 6 [UDP-forming]
Locus tag
A4U43_C05F31370
Gene type
protein coding
RefSeq status
MODEL
Organism
Asparagus officinalis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Genomic context

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See LOC109841011 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Aspof.V1 (GCF_001876935.1) 5 NC_033798.1 (121743067..121749242, complement)

Chromosome 5 - NC_033798.1Genomic Context describing neighboring genes Neighboring gene N-acylphosphatidylethanolamine synthase Neighboring gene stromal processing peptidase, chloroplastic Neighboring gene pentatricopeptide repeat-containing protein At5g61400-like Neighboring gene putative E3 ubiquitin-protein ligase RF298

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_033798.1 Chromosome 5 Reference Aspof.V1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable cellulose synthase A catalytic subunit 5 [UDP-forming]; probable cellulose synthase A catalytic subunit 6 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Asparagus officinalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aspof.V1

Genomic

  1. NC_033798.1 Reference Aspof.V1

    Range
    121743067..121749242 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020409851.1 → XP_020265440.1  probable cellulose synthase A catalytic subunit 5 [UDP-forming] isoform X1

    UniProtKB/TrEMBL
    A0A5P1EYD6
    Conserved Domains (1) summary
    cl28038
    Location:1 → 1087
    Cellulose_synt; Cellulose synthase

  2. XM_020409852.1 → XP_020265441.1  probable cellulose synthase A catalytic subunit 6 [UDP-forming] isoform X2

    UniProtKB/TrEMBL
    A0A5P1ES13
    Conserved Domains (1) summary
    cl28038
    Location:9 → 943
    Cellulose_synt; Cellulose synthase
Nucleotide Protein
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