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LOC109840503 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [ Asparagus officinalis (garden asparagus) ]

Gene ID: 109840503, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109840503
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Asparagus officinalis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Genomic context

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See LOC109840503 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Aspof.V1 (GCF_001876935.1) 5 NC_033798.1 (105240925..105244301, complement)

Chromosome 5 - NC_033798.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109840502 Neighboring gene serine/arginine-rich splicing factor RSZ21A-like Neighboring gene protein CYPRO4-like Neighboring gene uncharacterized protein At5g39570-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_033798.1 Chromosome 5 Reference Aspof.V1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Asparagus officinalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aspof.V1

Genomic

  1. NC_033798.1 Reference Aspof.V1

    Range
    105240925..105244301 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020409172.1 → XP_020264761.1  LOW QUALITY PROTEIN: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    Conserved Domains (1) summary
    cl28137
    Location:1 → 831
    Glyco_transf_20; Glycosyltransferase family 20
Nucleotide Protein
Heading Accession and Version

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