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LOC109837638 DNA-directed RNA polymerase II subunit 4 [ Asparagus officinalis (garden asparagus) ]

Gene ID: 109837638, updated on 11-Apr-2024

Summary

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Gene symbol
LOC109837638
Gene description
DNA-directed RNA polymerase II subunit 4
Locus tag
A4U43_C01F31860
Gene type
protein coding
RefSeq status
MODEL
Organism
Asparagus officinalis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Genomic context

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See LOC109837638 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Aspof.V1 (GCF_001876935.1) 1 NC_033794.1 (123315457..123322170, complement)

Chromosome 1 - NC_033794.1Genomic Context describing neighboring genes Neighboring gene mitochondrial carrier protein MTM1-like Neighboring gene U-box domain-containing protein 4-like Neighboring gene uncharacterized LOC109844366 Neighboring gene sm-like protein LSM8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_033794.1 Chromosome 1 Reference Aspof.V1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus in response to heat stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Asparagus officinalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aspof.V1

Genomic

  1. NC_033794.1 Reference Aspof.V1

    Range
    123315457..123322170 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020406281.1 → XP_020261870.1  DNA-directed RNA polymerase II subunit 4

    UniProtKB/TrEMBL
    A0A5P1FTY6
    Conserved Domains (1) summary
    smart00657
    Location:16 → 138
    RPOL4c; DNA-directed RNA-polymerase II subunit
Nucleotide Protein
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