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LOC109824399 alpha-(1,4)-fucosyltransferase [ Asparagus officinalis (garden asparagus) ]

Gene ID: 109824399, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109824399
Gene description
alpha-(1,4)-fucosyltransferase
Locus tag
A4U43_C09F7730
Gene type
protein coding
RefSeq status
MODEL
Organism
Asparagus officinalis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Genomic context

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See LOC109824399 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Aspof.V1 (GCF_001876935.1) 9 NC_033802.1 (21136040..21148834, complement)

Chromosome 9 - NC_033802.1Genomic Context describing neighboring genes Neighboring gene trafficking protein particle complex subunit 12 Neighboring gene conserved oligomeric Golgi complex subunit 5 Neighboring gene uncharacterized mitochondrial protein AtMg00860-like Neighboring gene probable CCR4-associated factor 1 homolog 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_033802.1 Chromosome 9 Reference Aspof.V1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-(1->3)-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-(1,4)-fucosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Asparagus officinalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aspof.V1

Genomic

  1. NC_033802.1 Reference Aspof.V1

    Range
    21136040..21148834 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020390990.1 → XP_020246579.1  alpha-(1,4)-fucosyltransferase

    UniProtKB/TrEMBL
    A0A5P1E7R7
    Conserved Domains (1) summary
    pfam00852
    Location:214 → 391
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
Nucleotide Protein
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