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LOC109822418 UV-stimulated scaffold protein A homolog [ Asparagus officinalis (garden asparagus) ]

Gene ID: 109822418, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109822418
Gene description
UV-stimulated scaffold protein A homolog
Locus tag
A4U43_C08F21880
Gene type
protein coding
RefSeq status
MODEL
Organism
Asparagus officinalis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Genomic context

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See LOC109822418 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Aspof.V1 (GCF_001876935.1) 8 NC_033801.1 (82050606..82053153)

Chromosome 8 - NC_033801.1Genomic Context describing neighboring genes Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene TLD domain-containing protein 2 Neighboring gene glutathione S-transferase T3-like Neighboring gene uncharacterized LOC109821984 Neighboring gene uncharacterized LOC109822260

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_033801.1 Chromosome 8 Reference Aspof.V1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to UV IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription-coupled nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: UV-stimulated scaffold protein A homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Asparagus officinalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aspof.V1

Genomic

  1. NC_033801.1 Reference Aspof.V1

    Range
    82050606..82053153
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020388611.1 → XP_020244200.1  LOW QUALITY PROTEIN: UV-stimulated scaffold protein A homolog

    Conserved Domains (1) summary
    pfam09740
    Location:423 → 523
    DUF2043; Uncharacterized conserved protein (DUF2043)
Nucleotide Protein
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Molecular Biology Databases