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LOC109818992 probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 [ Cajanus cajan (pigeon pea) ]

Gene ID: 109818992, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109818992
Gene description
probable tRNA (guanine(26)-N(2))-dimethyltransferase 2
Locus tag
KK1_037078
Gene type
protein coding
RefSeq status
MODEL
Organism
Cajanus cajan
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus
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Genomic context

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See LOC109818992 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current C.cajan_V1.0 (GCF_000340665.1) Unplaced Scaffold NW_017984415.1 (72764..79464)

NW_017984415.1Genomic Context describing neighboring genes Neighboring gene protein COBRA Neighboring gene COBRA-like protein 4 Neighboring gene DNA-directed RNA polymerase II subunit 4 Neighboring gene probable UDP-arabinopyranose mutase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017984415 Unplaced Scaffold Reference C.cajan_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. Dutta S, et al. BMC Plant Biol, 2011 Jan 20. PMID 21251263, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA N2-guanine methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable tRNA (guanine(26)-N(2))-dimethyltransferase 2
Names
putative N(2),N(2)-dimethylguanosine tRNA methyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cajanus cajan Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.cajan_V1.0 Primary Assembly

Genomic

  1. NW_017984415.1 Reference C.cajan_V1.0 Primary Assembly

    Range
    72764..79464
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020384555.2 → XP_020240144.1  probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2

    Conserved Domains (1) summary
    cl17173
    Location:194 → 552
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  2. XM_020384554.2 → XP_020240143.1  probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A151RGF2
    Conserved Domains (1) summary
    cl17173
    Location:194 → 552
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
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