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LOC109816859 callose synthase 12 [ Cajanus cajan (pigeon pea) ]

Gene ID: 109816859, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109816859
Gene description
callose synthase 12
Locus tag
KK1_033959
Gene type
protein coding
RefSeq status
MODEL
Organism
Cajanus cajan
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus
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Genomic context

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See LOC109816859 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current C.cajan_V1.0 (GCF_000340665.1) Unplaced Scaffold NW_017984271.1 (273801..281521, complement)

NW_017984271.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109816853 Neighboring gene mannan endo-1,4-beta-mannosidase 2 Neighboring gene small nucleolar RNA J33 Neighboring gene trithorax group protein osa Neighboring gene CASP-like protein 1C1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017984271 Unplaced Scaffold Reference C.cajan_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. Dutta S, et al. BMC Plant Biol, 2011 Jan 20. PMID 21251263, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cajanus cajan Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.cajan_V1.0 Primary Assembly

Genomic

  1. NW_017984271.1 Reference C.cajan_V1.0 Primary Assembly

    Range
    273801..281521 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020382010.2 → XP_020237599.1  callose synthase 12

    UniProtKB/TrEMBL
    A0A151RPU3
    Conserved Domains (2) summary
    pfam02364
    Location:802 → 1553
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:88 → 201
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

RNA

  1. XR_003805843.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases