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LOC109816560 probable glycosyltransferase At3g42180 [ Cajanus cajan (pigeon pea) ]

Gene ID: 109816560, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109816560
Gene description
probable glycosyltransferase At3g42180
Locus tag
KK1_033494
Gene type
protein coding
RefSeq status
MODEL
Organism
Cajanus cajan
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus
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Genomic context

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See LOC109816560 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current C.cajan_V1.0 (GCF_000340665.1) Unplaced Scaffold NW_017984255.1 (80791..83671)

NW_017984255.1Genomic Context describing neighboring genes Neighboring gene probable glycosyltransferase At3g42180 Neighboring gene probable glycosyltransferase At5g20260 Neighboring gene xylogalacturonan beta-1,3-xylosyltransferase-like Neighboring gene xylogalacturonan beta-1,3-xylosyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017984255 Unplaced Scaffold Reference C.cajan_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. Dutta S, et al. BMC Plant Biol, 2011 Jan 20. PMID 21251263, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable glycosyltransferase At3g42180
Names
Exostosin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cajanus cajan Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.cajan_V1.0 Primary Assembly

Genomic

  1. NW_017984255.1 Reference C.cajan_V1.0 Primary Assembly

    Range
    80791..83671
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020381619.2 → XP_020237208.1  probable glycosyltransferase At3g42180

    Conserved Domains (1) summary
    pfam03016
    Location:144 → 433
    Exostosin; Exostosin family
Nucleotide Protein
Heading Accession and Version

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