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LOC109816395 GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [ Cajanus cajan (pigeon pea) ]

Gene ID: 109816395, updated on 18-Sep-2024

Summary

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Gene symbol
LOC109816395
Gene description
GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase
Locus tag
KK1_033276
Gene type
protein coding
RefSeq status
MODEL
Organism
Cajanus cajan
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus
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Genomic context

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See LOC109816395 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current C.cajan_V1.0 (GCF_000340665.1) Unplaced Scaffold NW_017984248.1 (105788..113663, complement)

NW_017984248.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109816398 Neighboring gene uncharacterized LOC114917064 Neighboring gene uncharacterized LOC114917066 Neighboring gene uncharacterized LOC114917062

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017984248 Unplaced Scaffold Reference C.cajan_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. Dutta S, et al. BMC Plant Biol, 2011 Jan 20. PMID 21251263, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase
Names
Asparagine-linked glycosylation protein 11 isogeny

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cajanus cajan Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.cajan_V1.0 Primary Assembly

Genomic

  1. NW_017984248.1 Reference C.cajan_V1.0 Primary Assembly

    Range
    105788..113663 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029275011.1 → XP_029130844.1  GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A151RRR2
    Conserved Domains (1) summary
    PLN02949
    Location:7 → 460
    PLN02949; transferase, transferring glycosyl groups

  2. XM_029275010.1 → XP_029130843.1  GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A151RRR2
    Conserved Domains (1) summary
    PLN02949
    Location:7 → 459
    PLN02949; transferase, transferring glycosyl groups

  3. XM_020381400.2 → XP_020236989.2  GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A151RRR2
    Conserved Domains (1) summary
    PLN02949
    Location:7 → 459
    PLN02949; transferase, transferring glycosyl groups

  4. XM_020381402.2 → XP_020236991.2  GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase isoform X4

    UniProtKB/TrEMBL
    A0A151RRR2
    Conserved Domains (1) summary
    PLN02949
    Location:1 → 379
    PLN02949; transferase, transferring glycosyl groups

  5. XM_020381401.2 → XP_020236990.2  GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A151RRR2
    Conserved Domains (1) summary
    PLN02949
    Location:7 → 459
    PLN02949; transferase, transferring glycosyl groups
Nucleotide Protein
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