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LOC109814416 soluble starch synthase 1, chloroplastic/amyloplastic [ Cajanus cajan (pigeon pea) ]

Gene ID: 109814416, updated on 18-Sep-2024

Summary

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Gene symbol
LOC109814416
Gene description
soluble starch synthase 1, chloroplastic/amyloplastic
Locus tag
KK1_030316
Gene type
protein coding
RefSeq status
MODEL
Organism
Cajanus cajan
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus
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Genomic context

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See LOC109814416 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current C.cajan_V1.0 (GCF_000340665.1) Unplaced Scaffold NW_017984159.1 (201218..210418)

NW_017984159.1Genomic Context describing neighboring genes Neighboring gene protein DEFECTIVE IN MERISTEM SILENCING 3 Neighboring gene protein IQ-DOMAIN 1 Neighboring gene phytolongin Phyl2.2 Neighboring gene soluble starch synthase 1, chloroplastic/amyloplastic-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017984159 Unplaced Scaffold Reference C.cajan_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. Dutta S, et al. BMC Plant Biol, 2011 Jan 20. PMID 21251263, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
soluble starch synthase 1, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cajanus cajan Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.cajan_V1.0 Primary Assembly

Genomic

  1. NW_017984159.1 Reference C.cajan_V1.0 Primary Assembly

    Range
    201218..210418
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020378830.2 → XP_020234419.1  soluble starch synthase 1, chloroplastic/amyloplastic

    UniProtKB/TrEMBL
    A0A151RZN5
    Conserved Domains (1) summary
    cd03791
    Location:145 → 645
    GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
Nucleotide Protein
Heading Accession and Version

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