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LOC109814177 sucrose synthase 6 [ Cajanus cajan (pigeon pea) ]

Gene ID: 109814177, updated on 22-Dec-2024

Summary

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Gene symbol
LOC109814177
Gene description
sucrose synthase 6
Locus tag
KK1_029972
Gene type
protein coding
RefSeq status
MODEL
Organism
Cajanus cajan
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus
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Genomic context

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See LOC109814177 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current C.cajan_V1.0 (GCF_000340665.1) Unplaced Scaffold NW_017984151.1 (250666..255718, complement)

NW_017984151.1Genomic Context describing neighboring genes Neighboring gene uncharacterized mitochondrial protein AtMg00810 Neighboring gene NAC domain-containing protein 86 Neighboring gene small nucleolar RNA Z103 Neighboring gene protein SET DOMAIN GROUP 40

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017984151 Unplaced Scaffold Reference C.cajan_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sucrose synthase 6
Names
Sucrose synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cajanus cajan Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.cajan_V1.0 Primary Assembly

Genomic

  1. NW_017984151.1 Reference C.cajan_V1.0 Primary Assembly

    Range
    250666..255718 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020378545.2 → XP_020234134.1  sucrose synthase 6

    UniProtKB/TrEMBL
    A0A151S0L2
    Conserved Domains (1) summary
    PLN00142
    Location:1 → 815
    PLN00142; sucrose synthase
Nucleotide Protein
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