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LOC109813710 probable beta-1,4-xylosyltransferase IRX10L [ Cajanus cajan (pigeon pea) ]

Gene ID: 109813710, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109813710
Gene description
probable beta-1,4-xylosyltransferase IRX10L
Locus tag
KK1_029296
Gene type
protein coding
RefSeq status
MODEL
Organism
Cajanus cajan
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus
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Genomic context

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See LOC109813710 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current C.cajan_V1.0 (GCF_000340665.1) Unplaced Scaffold NW_017984135.1 (215797..219767, complement)

NW_017984135.1Genomic Context describing neighboring genes Neighboring gene transaldolase Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 Neighboring gene sec14 cytosolic factor Neighboring gene ethylene-responsive transcription factor ERF114

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017984135 Unplaced Scaffold Reference C.cajan_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. Dutta S, et al. BMC Plant Biol, 2011 Jan 20. PMID 21251263, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-beta-D-xylan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glucuronoxylan glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX10L
Names
Exostosin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cajanus cajan Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.cajan_V1.0 Primary Assembly

Genomic

  1. NW_017984135.1 Reference C.cajan_V1.0 Primary Assembly

    Range
    215797..219767 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020377952.2 → XP_020233541.1  probable beta-1,4-xylosyltransferase IRX10L

    UniProtKB/TrEMBL
    A0A151S2K2
    Conserved Domains (1) summary
    pfam03016
    Location:60 → 355
    Exostosin; Exostosin family

  2. XM_020377953.2 → XP_020233542.1  probable beta-1,4-xylosyltransferase IRX10L

    UniProtKB/TrEMBL
    A0A151S2K2
    Conserved Domains (1) summary
    pfam03016
    Location:60 → 355
    Exostosin; Exostosin family
Nucleotide Protein
Heading Accession and Version

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