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LOC109813421 uncharacterized LOC109813421 [ Cajanus cajan (pigeon pea) ]

Gene ID: 109813421, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109813421
Gene description
uncharacterized LOC109813421
Locus tag
KK1_028911
Gene type
protein coding
RefSeq status
MODEL
Organism
Cajanus cajan
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus
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Genomic context

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See LOC109813421 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
101 current C.cajan_V1.0 (GCF_000340665.1) Unplaced Scaffold NW_017984127.1 (347676..372365)

NW_017984127.1Genomic Context describing neighboring genes Neighboring gene FACT complex subunit SSRP1-like Neighboring gene uncharacterized LOC109813434 Neighboring gene inorganic phosphate transporter 2-1, chloroplastic Neighboring gene uncharacterized LOC109813435

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017984127 Unplaced Scaffold Reference C.cajan_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. Dutta S, et al. BMC Plant Biol, 2011 Jan 20. PMID 21251263, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC109813421
Names
Retrovirus-related Pol polyprotein from transposon TNT 1-94
UDP-galactose:fucoside alpha-3-galactosyltransferase
beta-arabinofuranosyltransferase RAY1
probable histone-lysine N-methyltransferase set-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cajanus cajan Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.cajan_V1.0 Primary Assembly

Genomic

  1. NW_017984127.1 Reference C.cajan_V1.0 Primary Assembly

    Range
    347676..372365
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029274398.1 → XP_029130231.1  uncharacterized protein LOC109813421

    Conserved Domains (6) summary
    PTZ00121
    Location:646 → 889
    PTZ00121; MAEBL; Provisional
    COG5602
    Location:227 → 468
    Sin3; Histone deacetylase complex, regulatory component SIN3 [Chromatin structure and dynamics]
    pfam03407
    Location:1610 → 1830
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase
    pfam13961
    Location:1028 → 1054
    DUF4219; Domain of unknown function (DUF4219)
    pfam14009
    Location:1897 → 1960
    DUF4228; Domain of unknown function (DUF4228)
    pfam14223
    Location:1091 → 1179
    Retrotran_gag_2; gag-polypeptide of LTR copia-type
Nucleotide Protein
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