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LOC109813347 putative pentatricopeptide repeat-containing protein At5g65820 [ Cajanus cajan (pigeon pea) ]

Gene ID: 109813347, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109813347
Gene description
putative pentatricopeptide repeat-containing protein At5g65820
Locus tag
KK1_028757
Gene type
protein coding
RefSeq status
MODEL
Organism
Cajanus cajan
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus
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Genomic context

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See LOC109813347 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
101 current C.cajan_V1.0 (GCF_000340665.1) Unplaced Scaffold NW_017984124.1 (53468..64742, complement)

NW_017984124.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114916844 Neighboring gene uncharacterized LOC109813348 Neighboring gene chromatin modification-related protein EAF7 Neighboring gene auxin response factor 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017984124 Unplaced Scaffold Reference C.cajan_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. Dutta S, et al. BMC Plant Biol, 2011 Jan 20. PMID 21251263, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative pentatricopeptide repeat-containing protein At5g65820
Names
Pentatricopeptide repeat-containing protein At3g49730 family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cajanus cajan Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.cajan_V1.0 Primary Assembly

Genomic

  1. NW_017984124.1 Reference C.cajan_V1.0 Primary Assembly

    Range
    53468..64742 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020377513.2 → XP_020233102.1  putative pentatricopeptide repeat-containing protein At5g65820 isoform X2

    Conserved Domains (4) summary
    sd00004
    Location:304 → 331
    PPR; PPR repeat [structural motif]
    pfam01535
    Location:479 → 508
    PPR; PPR repeat
    pfam13041
    Location:440 → 487
    PPR_2; PPR repeat family
    cl25449
    Location:165 → 458
    PPR_2; PPR repeat family

  2. XM_020377512.2 → XP_020233101.1  putative pentatricopeptide repeat-containing protein At5g65820 isoform X1

    Conserved Domains (4) summary
    sd00004
    Location:304 → 331
    PPR; PPR repeat [structural motif]
    pfam01535
    Location:479 → 508
    PPR; PPR repeat
    pfam13041
    Location:440 → 487
    PPR_2; PPR repeat family
    cl25449
    Location:165 → 458
    PPR_2; PPR repeat family

  3. XM_020377511.2 → XP_020233100.1  putative pentatricopeptide repeat-containing protein At5g65820 isoform X1

    Conserved Domains (4) summary
    sd00004
    Location:304 → 331
    PPR; PPR repeat [structural motif]
    pfam01535
    Location:479 → 508
    PPR; PPR repeat
    pfam13041
    Location:440 → 487
    PPR_2; PPR repeat family
    cl25449
    Location:165 → 458
    PPR_2; PPR repeat family

  4. XM_020377510.2 → XP_020233099.1  putative pentatricopeptide repeat-containing protein At5g65820 isoform X1

    Conserved Domains (4) summary
    sd00004
    Location:304 → 331
    PPR; PPR repeat [structural motif]
    pfam01535
    Location:479 → 508
    PPR; PPR repeat
    pfam13041
    Location:440 → 487
    PPR_2; PPR repeat family
    cl25449
    Location:165 → 458
    PPR_2; PPR repeat family
Nucleotide Protein
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