U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC109812308 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 [ Cajanus cajan (pigeon pea) ]

Gene ID: 109812308, updated on 22-Dec-2024

Summary

Go to the top of the page Help
Gene symbol
LOC109812308
Gene description
UDP-glucuronate:xylan alpha-glucuronosyltransferase 2
Locus tag
KK1_027261
Gene type
protein coding
RefSeq status
MODEL
Organism
Cajanus cajan
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC109812308 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current C.cajan_V1.0 (GCF_000340665.1) Unplaced Scaffold NW_017984095.1 (196457..203683, complement)

NW_017984095.1Genomic Context describing neighboring genes Neighboring gene alpha-amylase Neighboring gene protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 Neighboring gene probable calcium-binding protein CML15 Neighboring gene calmodulin, striated muscle

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_017984095 Unplaced Scaffold Reference C.cajan_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. Dutta S, et al. BMC Plant Biol, 2011 Jan 20. PMID 21251263, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
UDP-glucuronate:xylan alpha-glucuronosyltransferase 2
Names
Glycogenin-1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cajanus cajan Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.cajan_V1.0 Primary Assembly

Genomic

  1. NW_017984095.1 Reference C.cajan_V1.0 Primary Assembly

    Range
    196457..203683 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020376242.2 → XP_020231831.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A151S7W0
    Conserved Domains (1) summary
    cd02537
    Location:299 → 543
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen

  2. XM_020376244.2 → XP_020231833.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 isoform X2

    Conserved Domains (1) summary
    cd02537
    Location:229 → 473
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen

  3. XM_029274184.1 → XP_029130017.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 isoform X2

    Conserved Domains (1) summary
    cd02537
    Location:229 → 473
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases