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LOC109811852 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11 [ Cajanus cajan (pigeon pea) ]

Gene ID: 109811852, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109811852
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11
Locus tag
KK1_026687
Gene type
protein coding
RefSeq status
MODEL
Organism
Cajanus cajan
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus
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Genomic context

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See LOC109811852 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current C.cajan_V1.0 (GCF_000340665.1) Unplaced Scaffold NW_017984087.1 (102082..105464, complement)

NW_017984087.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109811893 Neighboring gene protein SUPPRESSOR OF MAX2 1 Neighboring gene uncharacterized LOC109811872 Neighboring gene ras guanine nucleotide exchange factor L-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017984087 Unplaced Scaffold Reference C.cajan_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. Dutta S, et al. BMC Plant Biol, 2011 Jan 20. PMID 21251263, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11
Names
putative alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cajanus cajan Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.cajan_V1.0 Primary Assembly

Genomic

  1. NW_017984087.1 Reference C.cajan_V1.0 Primary Assembly

    Range
    102082..105464 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020375690.2 → XP_020231279.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11

    UniProtKB/TrEMBL
    A0A151S9A4
    Conserved Domains (1) summary
    cl28137
    Location:5 → 849
    Glyco_transf_20; Glycosyltransferase family 20
Nucleotide Protein
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