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LOC109809760 probable galacturonosyltransferase 6 [ Cajanus cajan (pigeon pea) ]

Gene ID: 109809760, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109809760
Gene description
probable galacturonosyltransferase 6
Locus tag
KK1_000995
Gene type
protein coding
RefSeq status
MODEL
Organism
Cajanus cajan
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus
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Genomic context

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See LOC109809760 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
9
Annotation release Status Assembly Chr Location
101 current C.cajan_V1.0 (GCF_000340665.1) 11 NC_033814.1 (10295547..10301849, complement)

Chromosome 11 - NC_033814.1Genomic Context describing neighboring genes Neighboring gene phospholipase A1-Igamma1, chloroplastic Neighboring gene photosystem II reaction center W protein, chloroplastic Neighboring gene magnesium transporter MRS2-I Neighboring gene E3 ubiquitin protein ligase DRIP2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_033814.1 Chromosome 11 Reference C.cajan_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. Dutta S, et al. BMC Plant Biol, 2011 Jan 20. PMID 21251263, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 6
Names
Glycosyltransferase QUASIMODO1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cajanus cajan Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.cajan_V1.0 Primary Assembly

Genomic

  1. NC_033814.1 Reference C.cajan_V1.0 Primary Assembly

    Range
    10295547..10301849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020373155.2 → XP_020228744.1  probable galacturonosyltransferase 6 isoform X2

    Conserved Domains (1) summary
    cl28622
    Location:1 → 623
    PLN02870; Probable galacturonosyltransferase

  2. XM_020373154.2 → XP_020228743.1  probable galacturonosyltransferase 6 isoform X1

    UniProtKB/TrEMBL
    A0A151SJ59
    Conserved Domains (1) summary
    cl28622
    Location:1 → 625
    PLN02870; Probable galacturonosyltransferase
Nucleotide Protein
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