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LOC109808324 granule-bound starch synthase 1, chloroplastic/amyloplastic [ Cajanus cajan (pigeon pea) ]

Gene ID: 109808324, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109808324
Gene description
granule-bound starch synthase 1, chloroplastic/amyloplastic
Locus tag
KK1_002097
Gene type
protein coding
RefSeq status
MODEL
Organism
Cajanus cajan
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus
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Genomic context

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See LOC109808324 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
14
Annotation release Status Assembly Chr Location
101 current C.cajan_V1.0 (GCF_000340665.1) 11 NC_033814.1 (22464469..22469179, complement)

Chromosome 11 - NC_033814.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109809974 Neighboring gene RNA-binding protein 24-B Neighboring gene vacuolar protein sorting-associated protein 8 homolog Neighboring gene transfer RNA cysteine (anticodon GCA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_033814.1 Chromosome 11 Reference C.cajan_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. Dutta S, et al. BMC Plant Biol, 2011 Jan 20. PMID 21251263, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycogen (starch) synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
granule-bound starch synthase 1, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cajanus cajan Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.cajan_V1.0 Primary Assembly

Genomic

  1. NC_033814.1 Reference C.cajan_V1.0 Primary Assembly

    Range
    22464469..22469179 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020371265.2 → XP_020226854.1  granule-bound starch synthase 1, chloroplastic/amyloplastic

    UniProtKB/TrEMBL
    A0A151SMA7
    Conserved Domains (1) summary
    cd03791
    Location:89 → 588
    GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...

  2. XM_020371266.2 → XP_020226855.1  granule-bound starch synthase 1, chloroplastic/amyloplastic

    UniProtKB/TrEMBL
    A0A151SMA7
    Conserved Domains (1) summary
    cd03791
    Location:89 → 588
    GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
Nucleotide Protein
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