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LOC109804787 probable galacturonosyltransferase 13 [ Cajanus cajan (pigeon pea) ]

Gene ID: 109804787, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109804787
Gene description
probable galacturonosyltransferase 13
Locus tag
KK1_022779
Gene type
protein coding
RefSeq status
MODEL
Organism
Cajanus cajan
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus
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Genomic context

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See LOC109804787 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
101 current C.cajan_V1.0 (GCF_000340665.1) 9 NC_033812.1 (174741..181396, complement)

Chromosome 9 - NC_033812.1Genomic Context describing neighboring genes Neighboring gene chaperone protein ClpB3, chloroplastic Neighboring gene membrane-anchored ubiquitin-fold protein 1 Neighboring gene 7-deoxyloganetin glucosyltransferase Neighboring gene alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_033812.1 Chromosome 9 Reference C.cajan_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. Dutta S, et al. BMC Plant Biol, 2011 Jan 20. PMID 21251263, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 13; probable galacturonosyltransferase 14
Names
Glycosyltransferase QUASIMODO1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cajanus cajan Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.cajan_V1.0 Primary Assembly

Genomic

  1. NC_033812.1 Reference C.cajan_V1.0 Primary Assembly

    Range
    174741..181396 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020366642.2 → XP_020222231.1  probable galacturonosyltransferase 14 isoform X2

    UniProtKB/TrEMBL
    A0A151T001
    Conserved Domains (1) summary
    PLN02870
    Location:1 → 533
    PLN02870; Probable galacturonosyltransferase

  2. XM_020366641.2 → XP_020222230.1  probable galacturonosyltransferase 13 isoform X1

    Conserved Domains (1) summary
    PLN02870
    Location:1 → 534
    PLN02870; Probable galacturonosyltransferase
Nucleotide Protein
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