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LOC109801553 arabinosyltransferase RRA3 [ Cajanus cajan (pigeon pea) ]

Gene ID: 109801553, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109801553
Gene description
arabinosyltransferase RRA3
Locus tag
KK1_012338
Gene type
protein coding
RefSeq status
MODEL
Organism
Cajanus cajan
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus
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Genomic context

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See LOC109801553 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
101 current C.cajan_V1.0 (GCF_000340665.1) 6 NC_033809.1 (9803255..9805885, complement)

Chromosome 6 - NC_033809.1Genomic Context describing neighboring genes Neighboring gene probable NAD(P)H dehydrogenase (quinone) FQR1-like 2 Neighboring gene uncharacterized LOC109801299 Neighboring gene HVA22-like protein k Neighboring gene polyol transporter 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_033809.1 Chromosome 6 Reference C.cajan_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. Dutta S, et al. BMC Plant Biol, 2011 Jan 20. PMID 21251263, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in root hair cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arabinosyltransferase RRA3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cajanus cajan Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.cajan_V1.0 Primary Assembly

Genomic

  1. NC_033809.1 Reference C.cajan_V1.0 Primary Assembly

    Range
    9803255..9805885 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020362652.2 → XP_020218241.1  arabinosyltransferase RRA3

    UniProtKB/TrEMBL
    A0A151TGE4
    Conserved Domains (2) summary
    pfam03407
    Location:193 → 415
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase
    pfam04156
    Location:25 → 131
    IncA; IncA protein
Nucleotide Protein
Heading Accession and Version

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