U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC109799406 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [ Cajanus cajan (pigeon pea) ]

Gene ID: 109799406, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC109799406
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
Locus tag
KK1_024104
Gene type
protein coding
RefSeq status
MODEL
Organism
Cajanus cajan
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC109799406 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
101 current C.cajan_V1.0 (GCF_000340665.1) 5 NC_033808.1 (3689575..3694770)

Chromosome 5 - NC_033808.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109799625 Neighboring gene uncharacterized LOC109799721 Neighboring gene TMV resistance protein N Neighboring gene aspartate aminotransferase, mitochondrial Neighboring gene shaggy-related protein kinase eta

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_033808.1 Chromosome 5 Reference C.cajan_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. Dutta S, et al. BMC Plant Biol, 2011 Jan 20. PMID 21251263, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
Names
putative alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cajanus cajan Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.cajan_V1.0 Primary Assembly

Genomic

  1. NC_033808.1 Reference C.cajan_V1.0 Primary Assembly

    Range
    3689575..3694770
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020359953.2 → XP_020215542.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

    UniProtKB/TrEMBL
    A0A151TL18
    Conserved Domains (1) summary
    cl28137
    Location:1 → 844
    Glyco_transf_20; Glycosyltransferase family 20
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases