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LOC109799340 callose synthase 5 [ Cajanus cajan (pigeon pea) ]

Gene ID: 109799340, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109799340
Gene description
callose synthase 5
Locus tag
KK1_024208
Gene type
protein coding
RefSeq status
MODEL
Organism
Cajanus cajan
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus
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Genomic context

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See LOC109799340 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
43
Annotation release Status Assembly Chr Location
101 current C.cajan_V1.0 (GCF_000340665.1) 5 NC_033808.1 (4887433..4907412, complement)

Chromosome 5 - NC_033808.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ domain-containing protein At2g13690 Neighboring gene uncharacterized LOC109799694 Neighboring gene small nucleolar RNA J33 Neighboring gene mitogen-activated protein kinase kinase kinase 3 Neighboring gene ras-related protein RABC1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_033808.1 Chromosome 5 Reference C.cajan_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. Dutta S, et al. BMC Plant Biol, 2011 Jan 20. PMID 21251263, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cajanus cajan Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.cajan_V1.0 Primary Assembly

Genomic

  1. NC_033808.1 Reference C.cajan_V1.0 Primary Assembly

    Range
    4887433..4907412 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020359869.2 → XP_020215458.2  callose synthase 5

    UniProtKB/TrEMBL
    A0A151TLC4
    Conserved Domains (3) summary
    pfam02364
    Location:1035 → 1764
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:45 → 152
    Vta1; Vta1 like
    pfam14288
    Location:320 → 433
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

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