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LOC109797688 probable beta-1,4-xylosyltransferase IRX9 [ Cajanus cajan (pigeon pea) ]

Gene ID: 109797688, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109797688
Gene description
probable beta-1,4-xylosyltransferase IRX9
Locus tag
KK1_010085
Gene type
protein coding
RefSeq status
MODEL
Organism
Cajanus cajan
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus
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Genomic context

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See LOC109797688 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
101 current C.cajan_V1.0 (GCF_000340665.1) 3 NC_033806.1 (18298935..18301729, complement)

Chromosome 3 - NC_033806.1Genomic Context describing neighboring genes Neighboring gene interactor of constitutive active ROPs 2, chloroplastic Neighboring gene protein IQ-DOMAIN 1 Neighboring gene pentatricopeptide repeat-containing protein At3g53360, mitochondrial Neighboring gene DEAD-box ATP-dependent RNA helicase 57

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_033806.1 Chromosome 3 Reference C.cajan_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. Dutta S, et al. BMC Plant Biol, 2011 Jan 20. PMID 21251263, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX9
Names
Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cajanus cajan Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.cajan_V1.0 Primary Assembly

Genomic

  1. NC_033806.1 Reference C.cajan_V1.0 Primary Assembly

    Range
    18298935..18301729 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020357798.2 → XP_020213387.1  probable beta-1,4-xylosyltransferase IRX9

    UniProtKB/TrEMBL
    A0A151TUW6
    Conserved Domains (1) summary
    cl11394
    Location:1 → 337
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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