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LOC109797416 F-box protein GID2 [ Cajanus cajan (pigeon pea) ]

Gene ID: 109797416, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109797416
Gene description
F-box protein GID2
Locus tag
KK1_009676
Gene type
protein coding
RefSeq status
MODEL
Organism
Cajanus cajan
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus
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Genomic context

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See LOC109797416 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
101 current C.cajan_V1.0 (GCF_000340665.1) 3 NC_033806.1 (13996375..13997498, complement)

Chromosome 3 - NC_033806.1Genomic Context describing neighboring genes Neighboring gene protein MRG2 Neighboring gene F-box protein At2g32560 Neighboring gene LYR motif-containing protein 4B Neighboring gene MFP1 attachment factor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_033806.1 Chromosome 3 Reference C.cajan_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. Dutta S, et al. BMC Plant Biol, 2011 Jan 20. PMID 21251263, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box protein GID2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cajanus cajan Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.cajan_V1.0 Primary Assembly

Genomic

  1. NC_033806.1 Reference C.cajan_V1.0 Primary Assembly

    Range
    13996375..13997498 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020357447.2 → XP_020213036.1  F-box protein GID2 isoform X1

    Conserved Domains (1) summary
    pfam00646
    Location:82 → 125
    F-box; F-box domain

  2. XM_020357448.2 → XP_020213037.1  F-box protein GID2 isoform X2

    UniProtKB/TrEMBL
    A0A151TTV7
    Conserved Domains (1) summary
    pfam00646
    Location:36 → 79
    F-box; F-box domain
Nucleotide Protein
Heading Accession and Version

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