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LOC109786435 UDP-arabinopyranose mutase 3 [ Aegilops tauschii ]

Gene ID: 109786435, updated on 11-Jan-2024

Summary

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Gene symbol
LOC109786435
Gene description
UDP-arabinopyranose mutase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Genomic context

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See LOC109786435 in Genome Data Viewer
Location:
chromosome: 2D
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 2D NC_053036.2 (127716720..127719825, complement)
101 previous assembly Aet v4.0 (GCF_002575655.1) 2D NC_053036.1 (127818458..127821493, complement)

Chromosome 2D - NC_053036.2Genomic Context describing neighboring genes Neighboring gene MADS-box transcription factor 18-like Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene uncharacterized LOC123497342

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-arabinopyranose mutase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053036.2 Reference Aet v5.0 Primary Assembly

    Range
    127716720..127719825 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020345004.3 → XP_020200593.1  UDP-arabinopyranose mutase 3

    UniProtKB/TrEMBL
    A0A453B4P8
    Conserved Domains (1) summary
    PLN03180
    Location:1 → 346
    PLN03180; reversibly glycosylated polypeptide; Provisional
Nucleotide Protein
Heading Accession and Version

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