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LOC109785687 hydroxyproline O-galactosyltransferase GALT6 [ Aegilops tauschii ]

Gene ID: 109785687, updated on 10-Oct-2024

Summary

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Gene symbol
LOC109785687
Gene description
hydroxyproline O-galactosyltransferase GALT6
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Genomic context

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See LOC109785687 in Genome Data Viewer
Location:
chromosome: 1D
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 1D NC_053035.2 (19399664..19403836)
101 previous assembly Aet v4.0 (GCF_002575655.1) 1D NC_053035.1 (19377585..19394875)

Chromosome 1D - NC_053035.2Genomic Context describing neighboring genes Neighboring gene fatty-acid-binding protein 3, chloroplastic Neighboring gene uncharacterized LOC109785739 Neighboring gene F-box protein At5g07610-like Neighboring gene F-box protein At5g07610

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053035.2 Reference Aet v5.0 Primary Assembly

    Range
    19399664..19403836
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020344287.3 → XP_020199876.3  hydroxyproline O-galactosyltransferase GALT6

    UniProtKB/TrEMBL
    A0A452XNC4
    Conserved Domains (1) summary
    PLN03133
    Location:142 → 648
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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