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LOC109784690 mannosyltransferase APTG1 [ Aegilops tauschii ]

Gene ID: 109784690, updated on 11-Jan-2024

Summary

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Gene symbol
LOC109784690
Gene description
mannosyltransferase APTG1
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Genomic context

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See LOC109784690 in Genome Data Viewer
Location:
chromosome: 6D
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 6D NC_053040.2 (12929783..12934079)
101 previous assembly Aet v4.0 (GCF_002575655.1) 6D NC_053040.1 (12980188..12984473)

Chromosome 6D - NC_053040.2Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g28690, mitochondrial Neighboring gene pre-mRNA-processing protein 40A Neighboring gene wall-associated receptor kinase 5-like Neighboring gene uncharacterized LOC120966063 Neighboring gene wall-associated receptor kinase 5 Neighboring gene uncharacterized LOC109784686

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,2-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mannosyltransferase APTG1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053040.2 Reference Aet v5.0 Primary Assembly

    Range
    12929783..12934079
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020343291.3 → XP_020198880.1  mannosyltransferase APTG1

    UniProtKB/TrEMBL
    A0A453MTE4
    Conserved Domains (1) summary
    cl21590
    Location:40 → 542
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
Nucleotide Protein
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