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LOC109779202 sucrose synthase 1 [ Aegilops tauschii ]

Gene ID: 109779202, updated on 11-Jan-2024

Summary

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Gene symbol
LOC109779202
Gene description
sucrose synthase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Genomic context

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See LOC109779202 in Genome Data Viewer
Location:
chromosome: 7D
Exon count:
16
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 7D NC_053041.2 (18147916..18153434)
101 previous assembly Aet v4.0 (GCF_002575655.1) 7D NC_053041.1 (18140102..18145699)

Chromosome 7D - NC_053041.2Genomic Context describing neighboring genes Neighboring gene disease resistance protein RGA5-like Neighboring gene uncharacterized LOC109779190 Neighboring gene LRR receptor-like serine/threonine-protein kinase EFR Neighboring gene uncharacterized LOC120968586

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sucrose synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053041.2 Reference Aet v5.0 Primary Assembly

    Range
    18147916..18153434
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020337811.3 → XP_020193400.1  sucrose synthase 1

    UniProtKB/TrEMBL
    A0A453QF86, A0A453QFX9
    Conserved Domains (1) summary
    PLN00142
    Location:4 → 815
    PLN00142; sucrose synthase

  2. XM_020337810.3 → XP_020193399.1  sucrose synthase 1

    UniProtKB/TrEMBL
    A0A453QF86, A0A453QFX9
    Conserved Domains (1) summary
    PLN00142
    Location:4 → 815
    PLN00142; sucrose synthase

  3. XM_020337812.3 → XP_020193401.1  sucrose synthase 1

    UniProtKB/TrEMBL
    A0A453QF86, A0A453QFX9
    Conserved Domains (1) summary
    PLN00142
    Location:4 → 815
    PLN00142; sucrose synthase

  4. XM_020337813.3 → XP_020193402.1  sucrose synthase 1

    UniProtKB/TrEMBL
    A0A453QF86, A0A453QFX9
    Conserved Domains (1) summary
    PLN00142
    Location:4 → 815
    PLN00142; sucrose synthase
Nucleotide Protein
Heading Accession and Version

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