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LOC109778706 glucan endo-1,3-beta-glucosidase 5 [ Aegilops tauschii ]

Gene ID: 109778706, updated on 11-Jan-2024

Summary

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Gene symbol
LOC109778706
Gene description
glucan endo-1,3-beta-glucosidase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Genomic context

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See LOC109778706 in Genome Data Viewer
Location:
chromosome: 5D
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 5D NC_053039.2 (362541765..362545813)
101 previous assembly Aet v4.0 (GCF_002575655.1) 5D NC_053039.1 (363300687..363304777)

Chromosome 5D - NC_053039.2Genomic Context describing neighboring genes Neighboring gene tuliposide A-converting enzyme b3, amyloplastic-like Neighboring gene tuliposide A-converting enzyme b1, amyloplastic Neighboring gene 2-hydroxyisoflavanone dehydratase Neighboring gene uncharacterized LOC109778688 Neighboring gene probable carboxylesterase 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucan endo-1,3-beta-glucosidase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053039.2 Reference Aet v5.0 Primary Assembly

    Range
    362541765..362545813
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020337267.3 → XP_020192856.1  glucan endo-1,3-beta-glucosidase 5

    UniProtKB/TrEMBL
    A0A453L008, A0A453L013
    Conserved Domains (2) summary
    smart00768
    Location:371 → 454
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:31 → 348
    Glyco_hydro; Glycosyl hydrolases
Nucleotide Protein
Heading Accession and Version

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