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LOC109777214 putative callose synthase 6 [ Aegilops tauschii ]

Gene ID: 109777214, updated on 11-Jan-2024

Summary

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Gene symbol
LOC109777214
Gene description
putative callose synthase 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC109777214 in Genome Data Viewer
Location:
chromosome: 3D
Exon count:
42
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 3D NC_053037.2 (241517170..241566197, complement)
101 previous assembly Aet v4.0 (GCF_002575655.1) 3D NC_053037.1 (240717762..240766577, complement)

Chromosome 3D - NC_053037.2Genomic Context describing neighboring genes Neighboring gene poly [ADP-ribose] polymerase 1-like Neighboring gene B3 domain-containing protein Os03g0212300-like Neighboring gene hyphally-regulated protein-like Neighboring gene chaperone protein dnaJ 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative callose synthase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053037.2 Reference Aet v5.0 Primary Assembly

    Range
    241517170..241566197 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040403838.2 → XP_040259772.1  putative callose synthase 6

    Conserved Domains (4) summary
    COG1178
    Location:500 → 649
    FbpB; ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
    pfam02364
    Location:1037 → 1769
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:61 → 180
    Vta1; Vta1 like
    pfam14288
    Location:347 → 447
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

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