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LOC109774163 granule-bound starch synthase 1, chloroplastic/amyloplastic [ Aegilops tauschii ]

Gene ID: 109774163, updated on 10-Oct-2024

Summary

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Gene symbol
LOC109774163
Gene description
granule-bound starch synthase 1, chloroplastic/amyloplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Also known as
waxy; wx-TtD
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Genomic context

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See LOC109774163 in Genome Data Viewer
Location:
chromosome: 7D
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 7D NC_053041.2 (35497328..35501109, complement)
101 previous assembly Aet v4.0 (GCF_002575655.1) 7D NC_053041.1 (35536880..35540677, complement)

Chromosome 7D - NC_053041.2Genomic Context describing neighboring genes Neighboring gene probable inorganic phosphate transporter 1-4 Neighboring gene succinate dehydrogenase subunit 5, mitochondrial Neighboring gene putative inorganic phosphate transporter 1-13 Neighboring gene germin-like protein 1-3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
granule-bound starch synthase 1, chloroplastic/amyloplastic
Names
granule-bound starch synthase I
granule-bound starch synthase WX-TtD protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053041.2 Reference Aet v5.0 Primary Assembly

    Range
    35497328..35501109 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020332878.3 → XP_020188467.1  granule-bound starch synthase 1, chloroplastic/amyloplastic

    UniProtKB/TrEMBL
    A0A453QJC4, A0A453QJU1, M8AHB1
    Conserved Domains (1) summary
    cd03791
    Location:78 → 578
    GT5_Glycogen_synthase_DULL1-like; Glycogen synthase GlgA and similar proteins

  2. XM_045231730.1 → XP_045087665.1  granule-bound starch synthase 1, chloroplastic/amyloplastic

    UniProtKB/TrEMBL
    A0A453QJC4, M8AHB1
    Conserved Domains (1) summary
    cd03791
    Location:78 → 578
    GT5_Glycogen_synthase_DULL1-like; Glycogen synthase GlgA and similar proteins
Nucleotide Protein
Heading Accession and Version

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