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LOC109773455 beta-1,2-xylosyltransferase RCN11 [ Aegilops tauschii ]

Gene ID: 109773455, updated on 11-Jan-2024

Summary

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Gene symbol
LOC109773455
Gene description
beta-1,2-xylosyltransferase RCN11
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Genomic context

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See LOC109773455 in Genome Data Viewer
Location:
chromosome: 7D
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 7D NC_053041.2 (209953680..209959230, complement)
101 previous assembly Aet v4.0 (GCF_002575655.1) 7D NC_053041.1 (210309175..210314893, complement)

Chromosome 7D - NC_053041.2Genomic Context describing neighboring genes Neighboring gene zinc finger protein WIP2 Neighboring gene vegetative cell wall protein gp1-like Neighboring gene NADH-ubiquinone oxidoreductase chain 2-like Neighboring gene small nucleolar RNA Z247

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,2-xylosyltransferase RCN11
Names
beta-(1,2)-xylosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053041.2 Reference Aet v5.0 Primary Assembly

    Range
    209953680..209959230 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020332149.3 → XP_020187738.1  beta-1,2-xylosyltransferase RCN11

    UniProtKB/TrEMBL
    A0A453RJD4
    Conserved Domains (1) summary
    pfam04577
    Location:236 → 485
    DUF563; Protein of unknown function (DUF563)
Nucleotide Protein
Heading Accession and Version

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