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LOC109772961 glucan endo-1,3-beta-glucosidase 6 [ Aegilops tauschii ]

Gene ID: 109772961, updated on 11-Jan-2024

Summary

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Gene symbol
LOC109772961
Gene description
glucan endo-1,3-beta-glucosidase 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Genomic context

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See LOC109772961 in Genome Data Viewer
Location:
chromosome: 6D
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 6D NC_053040.2 (86360094..86365799)
101 previous assembly Aet v4.0 (GCF_002575655.1) 6D NC_053040.1 (86349397..86355120)

Chromosome 6D - NC_053040.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120967395 Neighboring gene uncharacterized LOC109772959 Neighboring gene cycloartenol synthase Neighboring gene squamosa promoter-binding-like protein 3 Neighboring gene cycloartenol synthase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucan endo-1,3-beta-glucosidase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053040.2 Reference Aet v5.0 Primary Assembly

    Range
    86360094..86365799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020331670.3 → XP_020187259.1  glucan endo-1,3-beta-glucosidase 6

    UniProtKB/TrEMBL
    A0A453N9C5, M8C218
    Conserved Domains (2) summary
    smart00768
    Location:372 → 456
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:35 → 353
    Glyco_hydro; Glycosyl hydrolases
Nucleotide Protein
Heading Accession and Version

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