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LOC109771842 probable galacturonosyltransferase 15 [ Aegilops tauschii ]

Gene ID: 109771842, updated on 11-Jan-2024

Summary

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Gene symbol
LOC109771842
Gene description
probable galacturonosyltransferase 15
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Genomic context

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See LOC109771842 in Genome Data Viewer
Location:
chromosome: 3D
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 3D NC_053037.2 (401000554..401004624, complement)
101 previous assembly Aet v4.0 (GCF_002575655.1) 3D NC_053037.1 (400570858..400574601, complement)

Chromosome 3D - NC_053037.2Genomic Context describing neighboring genes Neighboring gene subtilisin-like protease SBT5.6 Neighboring gene uncharacterized LOC120976790 Neighboring gene uncharacterized LOC120975960 Neighboring gene uncharacterized LOC120975961

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053037.2 Reference Aet v5.0 Primary Assembly

    Range
    401000554..401004624 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020330535.3 → XP_020186124.1  probable galacturonosyltransferase 15

    UniProtKB/TrEMBL
    A0A453FGZ2, A0A453FGZ3
    Conserved Domains (1) summary
    PLN02867
    Location:25 → 525
    PLN02867; Probable galacturonosyltransferase
Nucleotide Protein
Heading Accession and Version

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