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LOC109771642 probable beta-1,3-galactosyltransferase 2 [ Aegilops tauschii ]

Gene ID: 109771642, updated on 11-Jan-2024

Summary

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Gene symbol
LOC109771642
Gene description
probable beta-1,3-galactosyltransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Genomic context

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See LOC109771642 in Genome Data Viewer
Location:
chromosome: 7D
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 7D NC_053041.2 (568286194..568289668, complement)
101 previous assembly Aet v4.0 (GCF_002575655.1) 7D NC_053041.1 (568062585..568066080, complement)

Chromosome 7D - NC_053041.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120969606 Neighboring gene uncharacterized LOC120969607 Neighboring gene uncharacterized LOC109771643 Neighboring gene vegetative cell wall protein gp1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,3-galactosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053041.2 Reference Aet v5.0 Primary Assembly

    Range
    568286194..568289668 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020330341.3 → XP_020185930.1  probable beta-1,3-galactosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A453SWC3, N1QXC9
    Conserved Domains (1) summary
    PLN03193
    Location:1 → 397
    PLN03193; beta-1,3-galactosyltransferase; Provisional

  2. XM_040394761.2 → XP_040250695.1  probable beta-1,3-galactosyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A453SVW6
    Conserved Domains (1) summary
    PLN03193
    Location:1 → 363
    PLN03193; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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