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LOC109770878 probable beta-1,4-xylosyltransferase GT43A [ Aegilops tauschii ]

Gene ID: 109770878, updated on 11-Jan-2024

Summary

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Gene symbol
LOC109770878
Gene description
probable beta-1,4-xylosyltransferase GT43A
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Genomic context

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See LOC109770878 in Genome Data Viewer
Location:
chromosome: 1D
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 1D NC_053035.2 (48259547..48265583)
101 previous assembly Aet v4.0 (GCF_002575655.1) 1D NC_053035.1 (48108448..48114500)

Chromosome 1D - NC_053035.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120972600 Neighboring gene uncharacterized LOC109734142 Neighboring gene putative F-box/FBD/LRR-repeat protein At5g52460 Neighboring gene uncharacterized LOC109745893

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase GT43A
Names
probable glucuronosyltransferase Os05g0123100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053035.2 Reference Aet v5.0 Primary Assembly

    Range
    48259547..48265583
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020329592.3 → XP_020185181.1  probable beta-1,4-xylosyltransferase GT43A

    UniProtKB/TrEMBL
    A0A452XTK3
    Conserved Domains (1) summary
    cl11394
    Location:9 → 362
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases