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LOC109760320 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 [ Aegilops tauschii ]

Gene ID: 109760320, updated on 11-Jan-2024

Summary

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Gene symbol
LOC109760320
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Genomic context

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See LOC109760320 in Genome Data Viewer
Location:
chromosome: 1D
Exon count:
17
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 1D NC_053035.2 (49511208..49519532, complement)
101 previous assembly Aet v4.0 (GCF_002575655.1) 1D NC_053035.1 (49366282..49374606, complement)

Chromosome 1D - NC_053035.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109760317 Neighboring gene uncharacterized LOC109760315 Neighboring gene dihydropyrimidinase-like Neighboring gene uncharacterized LOC123494567

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053035.2 Reference Aet v5.0 Primary Assembly

    Range
    49511208..49519532 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020319152.2 → XP_020174741.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 isoform X2

    UniProtKB/TrEMBL
    A0A452XTR1, A0A452XTS4
    Conserved Domains (1) summary
    cl28137
    Location:22 → 600
    Glyco_transf_20; Glycosyltransferase family 20

  2. XM_040398112.2 → XP_040254046.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 isoform X1

    UniProtKB/TrEMBL
    M8BX17
    Conserved Domains (1) summary
    PLN03064
    Location:2 → 726
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Nucleotide Protein
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