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LOC109758605 probable inactive UDP-arabinopyranose mutase 2 [ Aegilops tauschii ]

Gene ID: 109758605, updated on 11-Jan-2024

Summary

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Gene symbol
LOC109758605
Gene description
probable inactive UDP-arabinopyranose mutase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Genomic context

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See LOC109758605 in Genome Data Viewer
Location:
chromosome: 2D
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 2D NC_053036.2 (591546689..591549341, complement)
101 previous assembly Aet v4.0 (GCF_002575655.1) 2D NC_053036.1 (592807150..592809814, complement)

Chromosome 2D - NC_053036.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109758613 Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 12 Neighboring gene probable serine/threonine-protein kinase abkC Neighboring gene uncharacterized LOC120973793

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable inactive UDP-arabinopyranose mutase 2
Names
probable UDP-arabinopyranose mutase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053036.2 Reference Aet v5.0 Primary Assembly

    Range
    591546689..591549341 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020317470.3 → XP_020173059.1  probable inactive UDP-arabinopyranose mutase 2 isoform X2

    Conserved Domains (1) summary
    pfam03214
    Location:84 → 422
    RGP; Reversibly glycosylated polypeptide

  2. XM_020317469.3 → XP_020173058.1  probable inactive UDP-arabinopyranose mutase 2 isoform X1

    UniProtKB/TrEMBL
    A0A453D5E6, N1R173
    Conserved Domains (1) summary
    pfam03214
    Location:5 → 343
    RGP; Reversibly glycosylated polypeptide
Nucleotide Protein
Heading Accession and Version

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