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LOC109756982 glucan endo-1,3-beta-glucosidase 4 [ Aegilops tauschii ]

Gene ID: 109756982, updated on 11-Jan-2024

Summary

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Gene symbol
LOC109756982
Gene description
glucan endo-1,3-beta-glucosidase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Genomic context

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See LOC109756982 in Genome Data Viewer
Location:
chromosome: 5D
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 5D NC_053039.2 (256319567..256323770)
101 previous assembly Aet v4.0 (GCF_002575655.1) 5D NC_053039.1 (257026062..257030494)

Chromosome 5D - NC_053039.2Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase SINA-like 10 Neighboring gene uncharacterized LOC109756997 Neighboring gene uncharacterized LOC109766307 Neighboring gene pentatricopeptide repeat-containing protein At3g09650, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucan endo-1,3-beta-glucosidase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053039.2 Reference Aet v5.0 Primary Assembly

    Range
    256319567..256323770
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020315818.3 → XP_020171407.1  glucan endo-1,3-beta-glucosidase 4 isoform X2

    UniProtKB/TrEMBL
    A0A453KEX7, A0A453KEZ9
    Conserved Domains (2) summary
    smart00768
    Location:369 → 453
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:31 → 352
    Glyco_hydro; Glycosyl hydrolases

  2. XM_020315815.3 → XP_020171404.1  glucan endo-1,3-beta-glucosidase 4 isoform X1

    UniProtKB/TrEMBL
    A0A453KEZ9, A0A453KF12
    Conserved Domains (2) summary
    smart00768
    Location:395 → 479
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:57 → 378
    Glyco_hydro; Glycosyl hydrolases
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases